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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

Pinned

  1. nnUNet Public

    Python 2.7k 951

  2. batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 842 186

  3. trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 219 19

  4. TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 144 53

  5. basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 118 34

  6. nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 300 45

Repositories

  • mood Public

    Repository for the Medical Out-of-Distribution Analysis Challenge.

    Python 46 Apache-2.0 5 1 0 Updated Jun 22, 2022
  • medicaldetectiontoolkit Public

    The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

    Python 1,130 Apache-2.0 290 37 5 Updated Jun 22, 2022
  • RegRCNN Public

    This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.

    Python 44 Apache-2.0 20 3 6 Updated Jun 21, 2022
  • nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

    Python 300 Apache-2.0 45 11 0 Updated Jun 20, 2022
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 842 Apache-2.0 186 23 4 Updated Jun 9, 2022
  • TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 144 Apache-2.0 53 12 0 Updated Jun 1, 2022
  • MITK-Diffusion Public

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    C++ 39 11 4 0 Updated May 17, 2022
  • RTTB Public

    Swiss army knife for radiotherapy analysis

    C++ 18 BSD-3-Clause 7 0 0 Updated May 4, 2022
  • Hyppopy Public

    Hyppopy is a python toolbox for blackbox optimization. It's purpose is to offer a unified and easy to use interface to a collection of solver libraries.

    Python 25 4 3 0 Updated Apr 26, 2022
  • nnUNet Public
    Python 2,698 Apache-2.0 951 139 7 Updated Apr 15, 2022
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