Max Planck Institute of Immunobiology and Epigenetics

Popular repositories

1. snakepipes Public

   Customizable workflows based on snakemake and python for the analysis of NGS data

   Python 298 73

2. parkour Public archive

   Moved to: https://github.com/maxplanck-ie/parkour2

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3. HiCAssembler Public

   Software to assemble contigs/scaffolds into chromosomes using Hi-C data

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4. rna-seq-qc Public

   Rna-seq pipeline, From FASTQ to differential expression analysis...

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5. 10X_snakepipe Public

   A snakemake pipeline for 10X genomics cellranger

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6. TheWhoTheWhatTheHuh Public

   "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.

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