OpenGene - Open Source Genomics Toolbox

OpenGene.jl Public
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Julia 61 17 8 0 Updated Jul 18, 2022
fastp Public
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 1,292 MIT 271 217 3 Updated May 19, 2022
GeneFuse Public
Gene fusion detection and visualization

C 90 MIT 54 27 0 Updated Feb 21, 2022
MutScan Public
Detect and visualize target mutations by scanning FastQ files directly

C 134 MIT 38 4 0 Updated Feb 10, 2022
gencore Public
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

C++ 94 MIT 31 34 0 Updated Oct 29, 2021
defastq Public
Ultra-fast Multi-threaded FASTQ Demultiplexing

C++ 4 MIT 0 0 0 Updated Sep 28, 2021
fastv Public
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

C++ 94 MIT 20 12 0 Updated Sep 29, 2020
IRDProc Public
Process genomic data downloaded from influenza research database for unique k-mer generating

Python 1 MIT 0 0 0 Updated Jul 30, 2020
UniqueKMER Public
Generate unique KMERs for every contig in a FASTA file

C 32 MIT 7 3 0 Updated Jul 28, 2020
repaq Public
A fast lossless FASTQ compressor with ultra-high compression ratio

C 97 MIT 18 6 0 Updated Jun 14, 2020

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