sequencing

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

music midi composition sequencing algorithmic-composition

Updated Jun 24, 2022
Python

twbattaglia / RNAseq-workflow

Star

A repository for setting up a RNAseq workflow

science workflow bioinformatics rna-seq pipeline sequencing genes

Updated Apr 10, 2017
R

chanzuckerberg / shasta

Star

De novo assembly from Oxford Nanopore reads.

nanopore assembly sequencing dna long-read pacbio de-novo

Updated Aug 17, 2022
C++

samtools / htsjdk

Star

A Java API for high-throughput sequencing data (HTS) formats.

java genomics ngs sequencing sam vcf dna java-api fasta bam cram

Updated Jul 27, 2022
Java

wurmlab / sequenceserver

Star

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

visualization javascript ruby bioinformatics genomics sequencing blast hacktoberfest sequence-alignment genomics-visualization

Updated Aug 12, 2022
JavaScript

r3fang / SnapATAC

Star

Analysis Pipeline for Single Cell ATAC-seq

machine-learning-algorithms sequencing epigenetics bioinformatics-pipeline single-cell-analysis single-cell-atac-seq

Updated Mar 7, 2022
R

sanger-pathogens / Roary

Star

Rapid large-scale prokaryote pan genome analysis

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Apr 21, 2022
Perl

milaboratory / mixcr

Star

MiXCR is a universal software for fast and accurate extraction and downstream analysis of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

bioinformatics rna-seq sequencing immunology t-cell antibody t-cell-receptor rep-seq single-cell 10x

Updated Aug 18, 2022
Java

OpenGene / AfterQC

Star

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

bioinformatics quality-control ngs sequencing overlap error trimming filtering fastq qc adapter-trimming

Updated May 14, 2020
Python

biocommons / hgvs

Star

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

bioinformatics genomics sequencing

Updated May 21, 2022
Python

sanger-pathogens / Artemis

Star

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Apr 12, 2022
Java

sanger-pathogens / snp-sites

Star

Finds SNP sites from a multi-FASTA alignment file

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Dec 16, 2020
C

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sequencing

Here are 348 public repositories matching this topic...

google / deepvariant

bitfieldaudio / OTTO

OpenGene / fastp

broadinstitute / gatk

galaxyproject / galaxy

hemberg-lab / scRNA.seq.course

brentp / mosdepth

47degrees / fetch

ideoforms / isobar

twbattaglia / RNAseq-workflow

chanzuckerberg / shasta

samtools / htsjdk

wurmlab / sequenceserver

r3fang / SnapATAC

sanger-pathogens / Roary

milaboratory / mixcr

OpenGene / AfterQC

biocommons / hgvs

sanger-pathogens / Artemis

sanger-pathogens / snp-sites

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