cnv

Annotation and Ranking of Structural Variation

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

ClassifyCNV: a tool for clinical annotation of copy-number variants

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

Integrated copy number variation detection toolset

This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

Copy number estimation of highly duplicated sequences

Short reads aligner for NIPT/CNV

Official code repository for JAX-CNV

A fork of the project Excavator2 from sourceforge.

Dzyaloshinskii-Moriya interaction for crystallographic class Cnv

A pipeline for detecting Somatic Insertion of DE novo RETROcopies

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data

R Package to compare copy number variant (CNV) results from multiple samples/methods

Workflow for Sequenza, cellularity and ploidy

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

X11 related utilities for hts

A tool to call CNV (Copy Number Variation) from bulk ATAC-Seq data