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Novartis

Popular repositories

  1. tidymodules Public

    An Object-Oriented approach to Shiny modules

    R 114 10

  2. YADA Public

    Open-source Data Ops

    Java 79 17

  3. peax Public

    Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

    Jupyter Notebook 62 13

  4. cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 33 21

  5. yap Public

    High throughput, pain-free big data pipelines.

    Python 31 6

  6. ontobrowser Public

    OntoBrowser is a web-based application for managing ontologies

    Java 29 8

Repositories

  • YADA Public

    Open-source Data Ops

    Java 79 Apache-2.0 17 17 6 Updated Sep 8, 2022
  • cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 33 Apache-2.0 21 8 2 Updated Sep 5, 2022
  • shinyValidator Public

    Audit your Shiny apps at each commit. Multiple levels of testings are offered: startup and crash tests, performance tests (load test and global code profiling), reactivity audit as well as output tests. All results are gathered in an HTML report uploaded and available to everyone on any CI/CD plaform or RStudio Connect

    HTML 21 1 7 (1 issue needs help) 0 Updated Sep 2, 2022
  • xgx Public

    Exploratory Graphics for PKPD data

    HTML 15 7 2 4 Updated Aug 29, 2022
  • AEGIS Public

    MHC-II presentation predictor

    Python 0 BSD-3-Clause 0 0 0 Updated Aug 18, 2022
  • scar Public

    scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

    Python 15 3 0 0 Updated Aug 9, 2022
  • peax Public

    Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

    Jupyter Notebook 62 13 3 14 Updated Aug 2, 2022
  • Project-Mona-Lisa Public

    Project Mona Lisa (PML): Machine-learning Assisted Diagramming Platform

    JavaScript 4 Apache-2.0 1 0 12 Updated Jul 6, 2022
  • pisces Public

    PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

    Python 24 Apache-2.0 3 7 0 Updated May 26, 2022
  • 16p11.2-Organoid-scRNA-seq Public

    Data and Code for publication titled “Patient brain organoids identify a link between the 16p11.2 copy number variant and the RBFOX1 gene”

    R 0 MIT 0 0 0 Updated May 20, 2022
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