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Pull requests: nf-core/modules

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Pull requests list

fix(bases2fastq): Remove stray ls
#2074 opened Sep 15, 2022 by Emiller88 Loading…
@Emiller88
1
Make epang output meta with the jplace channel
#2073 opened Sep 15, 2022 by erikrikarddaniel Loading…
2 of 14 tasks
Update eido/validate module
#2072 opened Sep 15, 2022 by rafalstepien Loading…
14 tasks
@rafalstepien
Update eido/validate module
#2071 opened Sep 15, 2022 by rafalstepien Loading…
14 tasks
@rafalstepien
[samtools] add optional csi output
Ready for Review
#2064 opened Sep 15, 2022 by bepoli Loading…
14 tasks done
Update container version
#2060 opened Sep 14, 2022 by rafalstepien Loading…
14 tasks
@rafalstepien
Make stringtie/merge arguments configurable
enhancement New feature or request Ready for Review
#2049 opened Sep 13, 2022 by bepoli Loading…
12 of 14 tasks
Updated dumpsoftwareversions.py to match the pipeline template
Ready for Review
#2045 opened Sep 11, 2022 by muffato Loading…
14 tasks
Add: ANGSD_DOCOUNTS
#2044 opened Sep 9, 2022 by jfy133 Loading…
11 of 14 tasks
Added an output channel for the gzi index
Ready for Review
#2036 opened Sep 9, 2022 by muffato Loading…
12 of 14 tasks
4
add FCS adaptor
#2033 opened Sep 8, 2022 by d4straub Loading…
12 of 14 tasks
1
Somalier relate
#2001 opened Sep 2, 2022 by ashotmarg • Draft
8 of 14 tasks
7
Added Somalier extract module
#1986 opened Aug 31, 2022 by ashotmarg Loading…
9 of 14 tasks
26
New module mageck/count
#1965 opened Aug 23, 2022 by LaurenceKuhl Loading…
11 of 14 tasks
13
Add in path to all files in index directory to copy on Azure correctly.
#1964 opened Aug 22, 2022 by vsmalladi Loading…
1 of 14 tasks
1
3
Add args to mlst
#1962 opened Aug 22, 2022 by petroslk Loading…
1 of 14 tasks
1
Fix bcftools/stats module
#1953 opened Aug 15, 2022 by SusiJo Loading…
11 of 13 tasks
3
Add splice junctions input to STAR align
#1942 opened Aug 4, 2022 by cguyomar Loading…
6 tasks done
New Module: YAHA
#1940 opened Aug 1, 2022 by cmatKhan Loading…
New Module: NextGenMap
#1938 opened Jul 31, 2022 by cmatKhan Loading…
[COOLER] new functions - balance / makebins
Ready for Review
#1937 opened Jul 29, 2022 by nservant Loading…
1
Picard/ADDORREPLACEREADGROUPS: making args conform to other packages; adding optional index output
#1931 opened Jul 27, 2022 by cmatKhan Loading…
11
New Module: endorspy
#1916 opened Jul 22, 2022 by aidaanva Loading…
12 of 14 tasks
1
16
New module: EMBOSS_SEQRET
#1901 opened Jul 18, 2022 by MillironX Loading…
14 tasks done
1
New module: vsearch/cluster
#1874 opened Jul 12, 2022 by mirpedrol Loading…
10 of 14 tasks
1
12
ProTip! Exclude everything labeled bug with -label:bug.