#

singularity

Here are 523 public repositories matching this topic...

apptainer / singularity

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

linux science hpc reproducible portable containers parallel container singularity reproducible-science cloud-native singularity-container portability rootless-containers

Updated Oct 10, 2022
Go

nextflow

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Nov 29, 2022
Groovy

apptainer / apptainer

Apptainer: Application containers for Linux

linux science hpc containers singularity singularity-container rootless-containers apptainer

Updated Nov 29, 2022
Go

NVIDIA / hpc-container-maker

HPC Container Maker

docker hpc containers singularity

Updated Oct 12, 2022
Python

getpopper / popper

Container-native task automation engine.

docker cli devops containers singularity reproducibility workflows automation-engine sciops podman

Updated Mar 29, 2022
Python

Azure / batch-shipyard

Simplify HPC and Batch workloads on Azure

docker serverless hpc azure containers gpu mpi slurm nfs singularity azure-batch azure-functions glusterfs rdma infiniband batch-processing windows-containers

Updated Nov 20, 2022
Python

plip

pharmai / plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

docker bioinformatics pdb protein-structure singularity python-bindings scientific-computing openbabel plip

Updated Aug 5, 2022
Python

singularityhub / docker2singularity

A docker image for converting docker images to singularity images.

docker docker-image singularity singularity-images

Updated Nov 10, 2022
Shell

glotzerlab / hoomd-blue

Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

python docker simulation gpu cuda molecular-dynamics singularity monte-carlo-simulation particle-system conda-forge hard-particle hoomd-blue

Updated Nov 29, 2022
C++

Sarek

SciLifeLab / Sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

docker workflow bioinformatics pipeline genomics nextflow cancer somatic-variants reproducible-research containers next-generation-sequencing singularity reproducible-science somatic germline germline-variants

Updated Jan 27, 2020
Nextflow

StaPH-B / docker-builds

📦

🐳 Dockerfiles and documentation on tools for public health bioinformatics

docker dockerfiles bioinformatics containers singularity

Updated Nov 28, 2022
Dockerfile

sylabs / singularity-cri

The Singularity implementation of the Kubernetes Container Runtime Interface

kubernetes hpc containers singularity cri singularity-cri

Updated Dec 29, 2020
Go

sregistry

singularityhub / sregistry

server for storage and management of singularity images

registry containers management singularity singularity-containers singularityhub

Updated Oct 13, 2022
JavaScript

sylabs / wlm-operator

Singularity implementation of k8s operator for interacting with SLURM.

kubernetes hpc slurm singularity k8s kubernetes-operator

Updated Dec 29, 2020
Go

x11vnc / x11vnc-desktop

Docker/Singularity image for Ubuntu with X11 and VNC

docker html5 ubuntu websocket x11 singularity novnc vnc

Updated Oct 17, 2022
Python

JuliaContainerization / SimpleContainerGenerator.jl

Create container images for using Julia packages (especially useful in environments without Internet access)

docker offline containers julia-language singularity julia-packages julia-package-compiler static-compilation

Updated Dec 25, 2021
Julia

giesselmann / nanopype

Snakemake pipelines for nanopore sequencing data archiving and processing

docker workflow nanopore pipeline singularity snakemake-pipelines

Updated Feb 2, 2022
Python

bdusell / singularity-tutorial

Tutorial for using Singularity containers

container cuda singularity pytorch cudnn

Updated Oct 1, 2020

biocorecrg / master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

docker nextflow singularity nanopore-sequencing nextflow-pipeline nanopore-analysis-pipeline

Updated Jan 12, 2022
HTML

singularity-hpc

singularityhub / singularity-hpc

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

hpc containers singularity reproducibility lmod

Updated Nov 28, 2022
Python

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