dna

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Here are 623 public repositories matching this topic...

biopython / biopython

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Official git repository for Biopython (originally converted from CVS)

python bioinformatics genomics protein-structure dna protein biopython phylogenetics sequence-alignment

Updated Oct 8, 2022
Python

google / deepvariant

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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Jun 13, 2022
Python

broadinstitute / gatk

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Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing dna gatk

Updated Oct 7, 2022
Java

galaxyproject / galaxy

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Data intensive science for everyone.

docker science workflow bioinformatics pipeline genomics workflow-engine ngs sequencing dna usegalaxy hacktoberfest

Updated Oct 8, 2022
Python

vgteam / vg

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tools for working with genome variation graphs

genomics graph dna variation-graph genome-graph

Updated Oct 7, 2022
C++

google / nucleus

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Python and C++ code for reading and writing genomics data.

bioinformatics genomics tensorflow dna

Updated Dec 9, 2021
C++

dib-lab / khmer

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In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

python bioinformatics bloom-filter dna count-min-sketch k-mer graph-traversal

Updated Aug 22, 2022
Python

pallada-92 / dna-3d-engine

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3d engine implementation in DNA code!

biology dna chemical-kinetics cube 3d chemical-reaction-networks molecular-biology 3d-engine chemical-reactions raymarching in-vitro piperine strand-displacement molecular-programming real-reactive-programming

Updated Nov 29, 2020

mdshw5 / pyfaidx

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Efficient pythonic random access to fasta subsequences

python bioinformatics genomics indexing dna protein fasta samtools bgzf

Updated Jul 26, 2022
Python

SupportIntelligence / Icewater

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16,432 Free Yara rules created by

cluster threat dna malware-analysis yara

Updated Jun 1, 2019
YARA

TimothyStiles / poly

Sponsor

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A Go package for engineering organisms.

bioinformatics synthetic-biology computational-biology dna genbank fasta molecular-biology synbio bioengineering primer-design golden-gate dna-barcode plasmids dna-barcoding codon-optimizer genetic-engineering engineering-organisms sequence-hashing

Updated Sep 29, 2022
Go

chanzuckerberg / shasta

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De novo assembly from Oxford Nanopore reads.

nanopore assembly sequencing dna long-read pacbio de-novo

Updated Oct 6, 2022
C++

RosettaCommons / PyRosetta.notebooks

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Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

jupyter-notebook dna rosetta rna-structure-prediction protein-design protein-folding protein-structure-prediction google-colab pyrosetta protein-docking

Updated Sep 16, 2022
Jupyter Notebook

BioJulia / Bio.jl

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[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

bioinformatics genomics biology deprecated dna biojulia biojulia-packages

Updated May 27, 2020
Julia

samtools / htsjdk

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A Java API for high-throughput sequencing data (HTS) formats.

java genomics ngs sequencing sam vcf dna java-api fasta bam cram

Updated Oct 7, 2022
Java

igordot / genomics

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A collection of scripts and notes related to genomics and bioinformatics

science workflow bioinformatics nanopore genomics sequencing vcf dna fasta gtf illumina fastq fast5

Updated Sep 13, 2022
R

lmdu / pyfastx

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a python package for fast random access to sequences from plain and gzipped FASTA/Q files

python bioinformatics genome biology assembly dna fasta sequence fastq

Updated Jun 27, 2022
C

ugeneunipro / ugene

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UGENE is free open-source cross-platform bioinformatics software

science workflow bioinformatics cross-platform pipeline cpp ngs sequencing qt5 dna msa ugene

Updated Oct 7, 2022
C++

nextstrain / nextclade

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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Updated Oct 7, 2022
TypeScript

lightdock / lightdock

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Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

bioinformatics chemistry structural-biology molecular-structures protein-structure artificial-intelligence dna protein proteomics docking peptides molecular-biology protein-design protein-protein-interaction swarm-intelligence structural-bioinformatics protein-dna-interactions bioinformatics-tool glowworm-swarm-optimization protein-docking

Updated Sep 14, 2022
C

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