ngs-analysis

Publication quality NGS track plotting

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

WisecondorX — An evolved WISECONDOR

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Metagenomic pipeline and other general scripts used in the lab.

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Project Manager for NGS data analysis

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

HemTools: a collection of NGS pipelines and bioinformatic analyses

Ultrafast sequence typing and gene detection from NGS raw reads

生物信息学项目实践仓库🏆🥇

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Utilities for analyzing next generation sequencing data.

This tutorial is created for educational purpose