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pathology

Here are 113 public repositories matching this topic...

baidu-research / NCRF

Cancer metastasis detection with neural conditional random field (NCRF)

deep-learning conditional-random-fields pathology whole-slide-imaging camelyon16

Updated Jun 22, 2022
Python

qupath / qupath

QuPath - Bioimage analysis & digital pathology

groovy opencv machine-learning imagej javafx image-processing histology cell-segmentation bioimage-informatics digital-pathology pathology whole-slide-imaging cell-analysis computational-pathology bioimage-analysis tissue-microarray-analysis

Updated Sep 28, 2022
Java

CLAM

mahmoodlab / CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

deep-learning tcga-data weakly-supervised-learning bioimage-informatics clam pathology whole-slide-imaging computational-pathology camelyon16 histopathology camelyon17 data-efficient mahmoodlab

Updated Sep 27, 2022
Python

basveeling / pcam

The PatchCamelyon (PCam) deep learning classification benchmark.

benchmark deep-learning dataset deep-learning-datasets pathology

Updated May 13, 2022
Python

openslide / openslide

C library for reading virtual slide images

c pathology whole-slide-imaging

Updated Sep 29, 2022
C

pathml

Dana-Farber-AIOS / pathml

Tools for computational pathology

python machine-learning research deep-learning pytorch image-analysis microscopy biomedical-image-processing fluorescence-microscopy-imaging digital-pathology pathology computational-pathology spatial-transcriptomics histopathology pathml

Updated Sep 19, 2022
Python

histolab / histolab

Library for Digital Pathology Image Processing

python data-science bioinformatics research biology hacktoberfest digital-pathology science-research pathology wsi digital-pathology-data

Updated Sep 30, 2022
Python

mahmoodlab / NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation

gan segmentation nuclei pathology cgan histopathology

Updated Jun 10, 2022
Python

mahmoodlab / PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI

genomics fusion transcriptomics pathology multimodal histopathology computational-pathogenomics pathomic multimodal-network mahmoodlab

Updated Aug 22, 2022
Jupyter Notebook

BiomedSciAI / histocartography

Histocartography is a framework bringing together AI and Digital Pathology

machine-learning deep-learning pytorch healthcare pathology graph-neural-networks

Updated Sep 24, 2022
Python

mahmoodlab / TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

deep-learning cup deep cancer-imaging-research cancer-research histology bioimage-informatics pathology cancer-detection bioimage-analysis toad histopathology wsi-images mahmoodlab unknown-primary

Updated Nov 1, 2021
Python

TissueImageAnalytics / tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

python deep-learning pathology whole-slide-imaging computational-pathology

Updated Sep 29, 2022
Python

Project-Evidence / project-evidence.github.io

Evidence SARS-CoV-2 Emerged From a Biological Laboratory in Wuhan, China

archive scribble pathology sars-cov-2

Updated May 21, 2020
HTML

MarvinLer / tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

tcga medical-imaging segmentation image-segmentation tcga-data weakly-supervised-learning miccai pathology whole-slide-imaging wsi computational-pathology multiple-instance-learning tumor-segmentation histopathology data-efficient slide-image-segmentation

Updated Aug 5, 2021
Python

nadeemlab / DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22]

deep-learning pytorch segmentation multiplex immunohistochemical-images cell-segmentation pathology cell-biology cloud-native-applications multitask-learning pathology-image pathology-gan immunohistochemistry

Updated Aug 25, 2022
Python

mahmoodlab / Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

gcn pathology wsi survival-prediction histopathology wsi-images mahmoodlab

Updated Jun 26, 2022
Python

slideflow

jamesdolezal / slideflow

Deep learning pipeline for digital pathology, with both Tensorflow and PyTorch support.

python machine-learning deep-learning histology pathology whole-slide-imaging computational-pathology histopathology

Updated Sep 27, 2022
Python

Project-MONAI / monai-deploy

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

python machine-learning ai deep-learning inference dicom pytorch healthcare medical-imaging fhir guidelines radiology pathology open-standard mlops ml-platform monai ai-application-development ai-application-deployment

Updated Sep 30, 2022
C#

PingjunChen / pyslide

Digital Pathology Whole Slide Image Analysis Toolbox

python deep-learning image-analysis pathology whole-slide-imaging computational-pathology

Updated Apr 13, 2021
Python

PingjunChen / tissueloc

Whole Slide Digital Pathology Image Tissue Localization

python pathology whole-slide-imaging computational-pathology pathology-image tissue-localization

Updated Jun 21, 2022
Python

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