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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.3k 516

  2. picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 830 348

  3. cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 865 312

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