samtools

Efficient pythonic random access to fasta subsequences

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

NGLess: NGS with less work

WebAssembly modules for genomics

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

Learning the Sequence Alignment/Map format

Multi-sample somatic variant caller

A pipeline to investigate horizontal gene transfer from NGS data

The ChIP-Seq peak calling algorithm using convolution neural networks

Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

RNAseq pipeline for alternative splicing junctions

Collecting Genotypes from ENA and make their SNPs

Determine sex from bam in homo sapiens file using a simple python script

Metalnx Micro Services for iRODS

Snakemake pipeline for Popoolation and Popoolation2

A simple Nextflow pipeline for testing the performance of sambamba vs samtools

🛠 under active development | RNA-Seq Workflow in Jupyter Notebook

For comparing the subgenomes of wheat