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@seqan

SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Pinned

  1. seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 313 69

  2. seqan Public

    SeqAn's official repository.

    C++ 423 173

Repositories

  • lambda Public

    LAMBDA – the Local Aligner for Massive Biological DatA

    C++ 65 19 8 2 Updated Dec 21, 2022
  • minions Public

    Comparison between different methods to simplify sequence data

    C++ 0 BSD-3-Clause 2 8 1 Updated Dec 20, 2022
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    C++ 7 BSD-3-Clause 8 11 1 Updated Dec 19, 2022
  • app-template Public template

    This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.

    CMake 6 BSD-3-Clause 8 19 0 Updated Dec 19, 2022
  • sharg-parser Public

    The modern argument parser for c++ tools

    C++ 4 7 12 1 Updated Dec 19, 2022
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    C++ 37 BSD-3-Clause 15 13 4 Updated Dec 19, 2022
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 313 69 19 1 Updated Dec 19, 2022
  • io-playground Public

    WIP

    C++ 0 BSD-3-Clause 0 0 0 Updated Nov 28, 2022
  • iGenVar Public

    The official repository for the iGenVar project.

    C++ 10 BSD-3-Clause 8 33 4 Updated Nov 23, 2022
  • needle Public

    A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

    C++ 9 BSD-3-Clause 5 7 1 Updated Nov 1, 2022
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