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@Cibiv

CIBIV - Center for Integrative Bioinformatics Vienna

Popular repositories

  1. IQ-TREE Public

    Efficient phylogenomic software by maximum likelihood

    C++ 163 43

  2. NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

    C++ 81 9

  3. Teaser Public

    A tool to benchmark mappers and different parameters within minutes

    HTML 41 9

  4. Correctly counting molecules using unique molecular identifiers (UMIs)

    TeX 9 1

  5. BODscore Public

    Scoring method for identified SNPs

    C 4

  6. CIBIV website

    HTML 3

Repositories

  • Cibiv.github.io Public

    CIBIV website

    HTML 3 0 0 0 Updated Jan 24, 2023
  • Python 0 0 0 0 Updated Oct 10, 2022
  • Python 0 MIT 2 0 0 Updated Aug 22, 2022
  • SANjar Public

    Simulates the deterministic and stochastic versions of the SAN model

    R 0 0 0 0 Updated May 6, 2022
  • ipoolseq-pipeline Public

    A pipeline for the analysis of iPool-Seq data

    Python 0 AGPL-3.0 1 0 0 Updated Feb 11, 2022
  • IQ-TREE Public

    Efficient phylogenomic software by maximum likelihood

    C++ 163 GPL-2.0 43 85 2 Updated Nov 4, 2021
  • trumicount Public

    Correctly counting molecules using unique molecular identifiers (UMIs)

    TeX 9 AGPL-3.0 1 2 0 Updated Sep 24, 2021
  • gwpcR Public

    Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

    R 3 AGPL-3.0 0 0 0 Updated Aug 23, 2021
  • py-remoter Public

    Task queue which keeps tracks of jobs and their exit status

    0 0 0 0 Updated Aug 13, 2021
  • zone-net Public

    Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like tree

    Python 0 AGPL-3.0 0 0 0 Updated May 20, 2020

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