ngs

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

C library for high-throughput sequencing data formats

Tools to process and analyze deep sequencing data.

Java utilities for Bioinformatics

Customizable workflows based on snakemake and python for the analysis of NGS data

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

A collection of awesome things regarding all omics.

Tools for working with genomic and high throughput sequencing data.

A collection of Galaxy-related training material

A Java API for high-throughput sequencing data (HTS) formats.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

UGENE is free open-source cross-platform bioinformatics software

R package for analyzing single-cell RNA-seq data

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

NGLess: NGS with less work

Detect and visualize target mutations by scanning FastQ files directly

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data