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GenomicsDB

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GenomicsDB

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https://www.genomicsdb.org

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GenomicsDB Public

Highly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.

C++ 72 19

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GenomicsDB-Python Public
Experimental Python Bindings to the native GenomicsDB library

Cython 0 MIT 0 0 0 Updated Dec 19, 2022
GenomicsDB Public
Highly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.

C++ 72 19 22 6 Updated Dec 17, 2022
GenomicsDB-Go Public
Experimental golang bindings to GenomicsDB

0 MIT 0 0 0 Updated Nov 3, 2022
GenomicsDB-R Public
Experimental R bindings to the native GenomicsDB library

R 4 GPL-2.0 1 3 0 Updated Jul 15, 2022
TestGenomicsDBJar Public
Test GenomicsDB jar from Maven central with GitHub Actions

Shell 1 0 0 0 Updated Jun 1, 2022
htslib Public
C library for high-throughput sequencing data formats

C 1 413 0 0 Updated Jul 11, 2021
GKL Public
Accelerated kernel library for genomics

C 1 MIT 39 0 0 Updated Nov 8, 2018
GenomicsSampleAPIs Public

Python 1 MIT 1 0 0 Updated Jun 22, 2017

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