Pinned

1. echtvar Public

   using all the bits for echt rapid variant annotation and filtering

   Rust 92 5

2. mosdepth Public

   fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

   Nim 527 88

3. slivar Public

   genetic variant expressions, annotation, and filtering for great good.

   Nim 181 16

4. somalier Public

   fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

   Nim 180 29

5. vcfanno Public

   annotate a VCF with other VCFs/BEDs/tabixed files

   Go 315 56

6. cyvcf2 Public

   cython + htslib == fast VCF and BCF processing

   Cython 317 63