refseq

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Rapid determination of appropriate reference genomes.

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

.NET library for accessing and manipulating bioinformatic datasets.

Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database

Mapping RefSeq RNA to OrthoDB (Under Development)

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

Downloading Genomes from RefSeq

NCBI Genome downloader

Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.

⬇️ Facilitates downloading NCBI's RefSeq with a human-readable file structure

🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

Randomly download genomes from NCBI RefSeq and Genbank