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@immunogenomics

Raychaudhuri Lab

Popular repositories

  1. harmony Public

    Fast, sensitive and accurate integration of single-cell data with Harmony

    R 350 82

  2. presto Public

    Fast Wilcoxon and auROC

    R 79 19

  3. symphony Public

    Efficient and precise single-cell reference atlas mapping with Symphony

    R 64 15

  4. cna Public

    Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

    Python 35 4

  5. LISI Public

    Methods to compute Local Inverse Simpson's Index (LISI)

    R 32 3

  6. HLA-TAPAS Public

    HLA-TAPAS pipeline for HLA association and fine-mapping studies

    Jupyter Notebook 25 9

Repositories

  • HLA_analyses_tutorial Public

    A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"

    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated Nov 15, 2022
  • harmony Public

    Fast, sensitive and accurate integration of single-cell data with Harmony

    R 350 82 60 1 Updated Nov 12, 2022
  • cdr3-QTL Public

    Trans-association between HLA and TCR-CDR3

    Jupyter Notebook 14 1 0 0 Updated Nov 11, 2022
  • presto Public

    Fast Wilcoxon and auROC

    R 79 19 8 1 Updated Nov 10, 2022
  • SCENT Public

    Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA

    R 11 MIT 1 0 0 Updated Oct 27, 2022
  • cov-ldsc Public
    Python 9 3 1 0 Updated Oct 14, 2022
  • RA_GWAS Public

    Trans-ancestry GWAS of rheumatoid arthritis

    Jupyter Notebook 3 0 0 0 Updated Aug 17, 2022
  • symphony Public

    Efficient and precise single-cell reference atlas mapping with Symphony

    R 64 GPL-3.0 15 12 0 Updated Aug 11, 2022
  • IMPACT Public

    Code for creating cell-type-specific regulatory element annotation files

    R 16 GPL-3.0 8 0 2 Updated Jul 7, 2022
  • singlecellmethods Public

    Collection of useful methods for single cell analysis

    Jupyter Notebook 12 GPL-3.0 3 1 0 Updated Jun 27, 2022
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