DaMBi

spotless-benchmark Public
A repository for benchmarking spatial deconvolution and mapping tools

Jupyter Notebook 6 MIT 0 2 0 Updated Nov 15, 2022
ComputationalCytometry Public
Workshop computational cytometry

R 1 0 0 0 Updated Nov 14, 2022
nichenetr Public
NicheNet: predict active ligand-target links between interacting cells

R 302 97 6 0 Updated Nov 9, 2022
FlowSOM Public
Using self-organizing maps for visualization and interpretation of cytometry data

R 17 6 5 0 Updated Nov 8, 2022
multinichenetr Public

R 7 GPL-3.0 3 2 0 Updated Oct 11, 2022
PeacoQC Public
Peak-based selection of high quality cytometry data

R 7 9 1 1 Updated Oct 7, 2022
DeepLearning_for_ImagingFlowCytometry Public
A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry data.

Python 9 GPL-3.0 3 1 7 Updated Sep 30, 2022
cifconvert Public
cifconvert is a package built on the python-bioformats package that saves images and masks from the proprietary Amnis CIF-file format to an HDF5 file.

Python 1 GPL-3.0 1 0 2 Updated Sep 30, 2022
CytoNorm Public
R library to normalize cytometry data

R 20 6 19 0 Updated Aug 10, 2022
biosegment Public
BioSegment is a software stack to enable segmentation of microscopy data using machine learning models.

TypeScript 0 GPL-3.0 2 0 0 Updated Aug 3, 2022

Pinned