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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

Pinned

  1. nnUNet Public

    Python 3.2k 1.1k

  2. A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 916 196

  3. trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 219 19

  4. TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 168 59

  5. An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 124 34

  6. nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 371 59

Repositories

  • MITK-Diffusion Public

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    C++ 47 13 4 0 Updated Jan 11, 2023
  • nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

    Python 371 Apache-2.0 59 17 0 Updated Jan 10, 2023
  • image_classification Public

    🎯 Deep Learning Framework for Image Classification & Regression in Pytorch for Fast Experiments

    Python 11 Apache-2.0 0 0 0 Updated Dec 27, 2022
  • nnUNet Public
    Python 3,222 Apache-2.0 1,131 224 14 Updated Dec 8, 2022
  • RegRCNN Public

    This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.

    Python 47 Apache-2.0 20 3 8 Updated Dec 8, 2022
  • HD-BET Public

    MRI brain extraction tool

    Python 161 Apache-2.0 46 14 2 Updated Dec 5, 2022
  • medicaldetectiontoolkit Public

    The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

    Python 1,175 Apache-2.0 298 39 5 Updated Nov 22, 2022
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 916 Apache-2.0 196 29 7 Updated Nov 17, 2022
  • TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 168 Apache-2.0 59 19 0 Updated Oct 27, 2022
  • Python 41 Apache-2.0 7 0 0 Updated Oct 7, 2022

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