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133 Open 493 Closed
133 Open 493 Closed
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Issues list

Counting ALT allele instances
#1584 opened Mar 16, 2023 by 7PintsOfCherryGarcia
bcftools view with region filter drops variants at POS=0 (telomeres)
#1571 opened Feb 24, 2023 by colin-nolan
1
@pd3
3
basemod API and hardclipped alignments
#1566 opened Feb 17, 2023 by jts
1
1
Behaviour of bam_mods_query_type() / interface to hts_base_mod_state
#1550 opened Jan 16, 2023 by cjw85
@jkbonfield
4
int overflow for big variant lines in vcf
#1539 opened Dec 16, 2022 by arnaldurgylfason
@daviesrob
4
bcf_hdr_remove leaves hash keys behind
#1533 opened Dec 6, 2022 by pd3
@pd3
10
tabix returns row from VCF file multiple times
#1470 opened Jul 11, 2022 by jwimberl
4
sam_hdr_remove_lines is inefficient if original header contains a lot of lines
#1460 opened Jun 23, 2022 by astaric
@whitwham
1
Extend vcf.h API to distinguish between the two indel types breaks-ABI
#1454 opened Jun 14, 2022 by pd3
1
Feature request: extend mpileup API
#1453 opened Jun 14, 2022 by pd3
3
Add support for bam/bai files in Azure blob storage
#1440 opened May 25, 2022 by smrgit
@whitwham
2
tabix: how to retain header for arbitrary file types?
#1434 opened May 11, 2022 by carbocation
@daviesrob
1
Random read error on google cloud.
#1424 opened Apr 21, 2022 by stefangroha
@whitwham
4
hts_log_error() extension for better error reporting
#1397 opened Feb 14, 2022 by lczech
@whitwham
5
[Documentation] Short examples?
#1368 opened Jan 1, 2022 by rubyFeedback wishlist
1
Feature request: Add option to tabix to interleave multiple bgzipped indexed files, without the need for external resorting.
#1338 opened Oct 4, 2021 by ghuls wishlist
9
Warning: shared-lib-calls-exit detected by a lint tool
#1315 opened Aug 8, 2021 by junaruga wishlist
1
Increase the mpileup default maximum depth
#1272 opened Apr 20, 2021 by valeriuo
@valeriuo
1.12 is an incomplete release
#1260 opened Mar 30, 2021 by jvanalstine
5
hts_str2dbl() (and hts_expr) can't parse hex by default on Illumos/OpenIndiana
#1251 opened Mar 9, 2021 by jmarshall
@daviesrob
HTSlib should fail on trailing INFO garbage
#1253 opened Mar 9, 2021 by yangyxt
3
Trouble building htslib-1.11.tar.bz2
#1243 opened Feb 26, 2021 by moldach
5
bgzf_useek and bgzidx_t scope
#1239 opened Feb 19, 2021 by Poshi
Skip to last record using tabix
#1231 opened Feb 13, 2021 by CreRecombinase
@valeriuo
2
bcf_hdr_parse_line() validation of INFO/FORMAT/etc keys and IDs
#1218 opened Feb 2, 2021 by jmarshall
@daviesrob
ProTip! Exclude everything labeled bug with -label:bug.