Nesvilab

Alexey Nesvizhskii's proteome bioinformatics group.

FragPipe Public
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

Java 88 21 68 1 Updated Nov 23, 2022
MSBooster Public
MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

Java 1 GPL-3.0 0 0 0 Updated Nov 22, 2022
clean-storage Public
A shell script to clean the Storage. Internal use only. DISCLAIMER: not responsible for loss of data.

Shell 0 Apache-2.0 0 0 0 Updated Nov 22, 2022
philosopher Public
A complete toolkit for shotgun proteomics data analysis

Go 79 GPL-3.0 17 3 (1 issue needs help) 0 Updated Nov 21, 2022
FP-PDV Public
A forked PDV for FragPipe

Java 0 GPL-3.0 16 0 0 Updated Nov 15, 2022
DIA-Umpire Public
Computational analysis for mass spectrometry-based proteomics data

14 10 2 0 Updated Nov 11, 2022
PTM-Shepherd Public
A tool for summarizing open search results

Java 8 4 1 0 Updated Nov 11, 2022
MSFragger-DIA-manuscript Public
Python and R script to generate the figures in the MSFragger-DIA manuscript

Python 0 Apache-2.0 0 0 0 Updated Oct 31, 2022
MSFTBX Public
MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)

Java 0 Apache-2.0 4 0 0 Updated Oct 11, 2022
Crystal-C Public
Crystal-C: A computational tool for refinement of open search results

3 2 1 0 Updated Oct 9, 2022

Pinned