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Sep 7, 2021 - Perl
#
snps
Here are 103 public repositories matching this topic...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 16, 2021 - Python
Strelka2 germline and somatic small variant caller
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Dec 29, 2021 - C++
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps
binary
nexus
vcf
phylogenetics
alignment
fasta
snapp
phylip
vcf-files
polyploid
haploid
phylogenetic-analysis
outgroup
convert-snps
vcf-format
phylip-matrix
diploid
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Nov 19, 2021 - Python
tools for genetic genealogy and the analysis of consumer DNA test results
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Feb 21, 2022 - Python
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
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Jan 2, 2022 - R
A fast 23andMe genome text file parser, now superseded by arv
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Nov 12, 2017 - Python
tools for reading, writing, merging, and remapping SNPs
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Feb 1, 2022 - Python
Pan-genomic sequence analysis
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Nov 2, 2017 - HTML
Datastructures and algorithms for working with genetic variation
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Sep 11, 2020 - Julia
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
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Mar 8, 2020 - Perl
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Oct 4, 2018 - R
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
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May 2, 2018 - HTML
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
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Feb 10, 2019 - C++
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
snps
genetics
population-genomics
population-genetics
population-structure
dna-sequences
snp-data
microsatellites
locus-summaries
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May 17, 2021 - HTML
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
electron
visualization
bam-files
bioinformatics
quality-control
snps
analysis
pathogen
ngs
host
next-generation-sequencing
dna
alignment
circos
bam
phat
bioinformatics-analysis
circos-graphs
bioinformatics-tool
circos-plot
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Feb 11, 2022 - TypeScript
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
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Oct 28, 2021 - R
An Efficient Swiss Army Knife for Population Genomic Analyses in R
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Sep 29, 2021 - R
vSNP -- validate SNPs
bam-files
snps
pipeline
genomics
vcf
phylogenetics
snp
wgs
high-throughput-sequencing
high
tuberculosis
whole-genome-sequencing
analysis-pipeline
mycobacterium-tuberculosis-complex
brucella
freebayes
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Feb 14, 2020 - Python
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
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Nov 24, 2021 - R
Scripts for file processing and analysis in phylogenetics and phylogeography
shell
ssh
r
snps
supercomputer
phylogeography
bayesian-inference
maximum-likelihood
population-structure
phylogeny
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Jan 6, 2021 - Shell
A haplotype analysis toolkit for natural variation study.
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Nov 6, 2021 - Perl
A simple python library to identify the most likely strain from the population
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Feb 18, 2022 - Python
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
snps
genome
genetic-algorithm
dbsnp
phenotype
snpedia
clinvar
omni
23andme
genetic-data
ancestrydna
data-crawling
rsid
genetic-tests
os-genome
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Feb 13, 2022 - JavaScript
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