transcriptome

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Nanopore sequence read simulator

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Building classifiers using cancer transcriptomes across 33 different cancer-types

Technology agnostic long read analysis pipeline for transcriptomes

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

The START App: R Shiny Transcriptome Analysis Resource Tool

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Merging, Annotation, Validation, and Illustration of Structural variants

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

A Python library to visualize and analyze long-read transcriptomes

Genome Annotation Without Nightmares

De novo clustering of long transcript reads into genes

Evolutionary Transcriptomics with R

de novo assembly of RNA-seq data using ABySS

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data

Derives consensus sequences from a set of long noisy reads by clustering and error correction.