sequence-alignments

Python library to facilitate genome assembly, annotation, and comparative genomics

SeqAn's official repository.

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

Inference of couplings in proteins and RNAs from sequence variation

Genome wide orthology inference and dNdS estimation

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

TREDPARSE: HLI Short Tandem Repeat (STR) caller

BWT, FM-index and bits vector for analyzing DNA sequence data.

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

genomic alignment similarity search tool

This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

Outlier detection in multiple sequence alignment

subset and spaced seed design tool

A crate to manipulate multiple sequences alignments in Rust.

Reliability Scoring and Masking of Multiple Sequence Alignments

This is projects of Bioinformatics