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@mahmoodlab

Mahmood Lab @ Harvard/BWH & MGH

AI for Pathology Image Analysis Lab @ HMS / BWH

Pinned

  1. CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 536 229

  2. HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 283 58

  3. TOAD Public

    AI-based pathology predicts origins for cancers of unknown primary - Nature

    Python 139 40

  4. CRANE Public

    Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

    Python 23 7

  5. PORPOISE Public

    Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

    Jupyter Notebook 97 22

  6. PathomicFusion Public

    Fusing Histology and Genomics via Deep Learning - IEEE TMI

    Jupyter Notebook 193 63

Repositories

  • PORPOISE Public

    Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

    Jupyter Notebook 97 GPL-3.0 22 2 0 Updated Feb 7, 2023
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 536 GPL-3.0 229 6 1 Updated Feb 2, 2023
  • HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 283 58 3 3 Updated Dec 12, 2022
  • SISH Public

    Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

    Python 64 GPL-3.0 18 0 0 Updated Oct 19, 2022
  • varpool Public

    Variance pooling to incorporate ITH in CPath models - MICCAI 2022

    Python 20 4 0 0 Updated Sep 27, 2022
  • PathomicFusion Public

    Fusing Histology and Genomics via Deep Learning - IEEE TMI

    Jupyter Notebook 193 GPL-3.0 63 2 1 Updated Aug 22, 2022
  • Patch-GCN Public

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    Python 66 GPL-3.0 26 2 0 Updated Jun 26, 2022
  • NucleiSegmentation Public

    cGAN-based Multi Organ Nuclei Segmentation

    Python 164 67 6 1 Updated Jun 10, 2022
  • CRANE Public

    Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

    Python 23 GPL-3.0 7 0 0 Updated May 17, 2022
  • MCAT Public

    Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021

    Jupyter Notebook 68 GPL-3.0 11 4 0 Updated Mar 11, 2022
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