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macs2

Here are 12 public repositories matching this topic...

nf-core / chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

workflow pipeline nextflow chip chip-seq macs2 nf-core chromatin-immunoprecipitation peak-calling

Updated Jan 25, 2023
Nextflow

ay-lab / ATACProc

ATAC-seq processing pipeline

atac-seq qc macs2 atacseqqc

Updated Apr 8, 2022
Shell

HuntsmanCancerInstitute / MultiRepMacsChIPSeq

Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

chip-seq atac-seq chromatin macs2 peak-calling

Updated Mar 18, 2023
Perl

ay-lab / ChIPLine

ChIP-seq analysis pipeline

chip-seq qc idr macs2

Updated Feb 10, 2023
Shell

skchronicles / PeakCalling

Benchmarking ChIP-seq peak callers

music gem chip-seq sicer macs2 peak-analysis peak-calling broad-peaks narrow-peaks dfilter pepr

Updated Dec 11, 2018
Python

uhkniazi / dismiss

DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

methylation epigenetics macs2 medip medip-seq

Updated May 13, 2016
R

jianhong / genomictools

docker file for genomic tools

rna-seq bioinformatics-pipeline chip-seq salmon kallisto bwa sleuth macs2 tximport

Updated Feb 16, 2023
Dockerfile

metamaden / seq_answers

Sequencing data preprocessing

Updated Jun 18, 2018
R

hisplan / docker-macs2

Dockerized MACS2

Updated Jan 31, 2020
Shell

stjude-biohackathon / peakPeekeR

Peak calling optimization via real time results assessment and interactive parameter adjustment.

shiny chip-seq atac-seq macs macs2 peak-calling cutandrun cutandtag genrich peak-callers sicer2

Updated Apr 29, 2022
R

elizabethpermina / ChIP-Seq-Otago-2017

chip-seq workshop-materials macs2

Updated Dec 4, 2017

CCBR / ASAP

CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

multiqc ngs-pipeline macs2 atac-seq-pipeline genrich

Updated Feb 7, 2023
Python

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