genome

🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

genes and genomes at your fingertips

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

🔬 Assemble large genomes using short reads

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

GenomeTools genome analysis system.

A genome browser that shows long reads and complex variants better

Genome annotation with AUGUSTUS

Next generation sequencing reads de novo assembler.

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Genomic Data Retrieval with R

Viral genomics analysis pipelines

Nanopore sequence read simulator

Fast and accurately polish the genome generated by long reads.