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@scverse

scverse

Foundational tools for omics data in the life sciences
README.md

Welcome to scverse!

scverse is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

Pinned

  1. scanpy Public

    Single-cell analysis in Python. Scales to >1M cells.

    Python 1.5k 498

  2. anndata Public

    Annotated data.

    Python 380 125

  3. muon Public

    muon is a multimodal omics Python framework

    Python 156 16

  4. mudata Public

    Multimodal Data (.h5mu) implementation for Python

    Python 44 9

  5. scvi-tools Public

    Deep probabilistic analysis of single-cell omics data

    Python 920 288

  6. scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 165 24

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