I do things related to open science & bioimage analysis.
One of them is http://qupath.github.io.
Another is http://bioimagebook.github.io.
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University of Edinburgh
- Edinburgh
- https://petebankhead.github.io
- @petebankhead
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998 contributions in the last year
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Contribution activity
November 2022
Created 97 commits in 3 repositories
Opened 28 pull requests in 2 repositories
qupath/qupath
27
merged
- Replace File(uri) with Paths.get(uri)
- Show command list/bar help text with tooltip
- Update dependencies & changelog
- Add perChannel and eps to normalize percentiles
- Fix code styling, emoji in yaml
- Simplify setting accelerators for menu items
- Make analysis pane tabs undockable
- Fix welcome URL
- Improve Welcome Stage
- Improved startup message dialog
- Fix exception type in GeometryTools
- Correct for viewer rotation when synchronizing
- Improve z/t index handling, object display & painting
- Improved object handling & new commands
- Use getURI rather than getUri
- ID instead of Id, caseID instead of uniqueID
- Improved tile export
- Add 'View -> Show recent commands'
- Improve TMA support for object transforms and json serialization
- Support serializing hierarchy to json
- Show annotations outside the image bounds
- Update PathObject method names
- Update build.gradle
- Update method names in PathObjectHierarchy
- Update to JavaCPP 1.5.8
- Some pull requests not shown.
qupath/qupath-docs
1
merged
Reviewed 1 pull request in 1 repository
qupath/qupath
1 pull request
Created an issue in qupath/qupath that received 5 comments
Update 'Unique ID' to 'Case ID' for TMA cores
TMACoreObject has a 'Unique ID' property, which was always confusingly named.
Its original purpose was to uniquely identify cores belonging to the …
5
comments



