structural-variation

Structural variation caller using third generation sequencing

Structural variant and indel caller for mapped sequencing data

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Structural variant toolkit for VCFs

structural variant calling and genotyping with existing tools, but, smoothly.

Fast and accurate gene fusion detection from RNA-Seq data

Long read based human genomic structural variation detection with cuteSV

Graph realignment tools for structural variants

Tools for processing and analyzing structural variants.

A structural variation pipeline for short-read sequencing

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

don't get DUP'ed or DEL'ed by your putative SVs.

A method for variant graph genotyping based on exact alignment of k-mers

simuG: a general-purpose genome simulator

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

Merging, Annotation, Validation, and Illustration of Structural variants

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Support Vector Structural Variation Genotyper

A method for circular DNA detection based on probabilistic mapping of ultrashort reads