kmers

fast and comprehensive k-mer counting package

Distributed k-mer counting and analysis on Apache Spark.

k-mer counter in Rust using the dashmap, rust-bio, and rayon crates

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

Extract kmers, skipmers, minimizers.

Alignment-free method to identify and analys discriminant genomic subsequences within pathogen sequences

Analysis of DNA Sequence Classification Using Neural Networks.

K-mer counting algorithms and count-data utilities for the BioJulia framework

bit-packed k-mers methods for Golang

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Estimate alignment-free SNP and accessory differences in closely related bacterial genomes

reference-free base quality score recalibration

Convert python string to hashed kmers and back again

The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.

Evaluation of Statistical Linear Models for Genome Virus Classification

Generate K-mer spectra to observe modalities of distributions