nf-core

Pinned

1. tools Public

   Python package with helper tools for the nf-core community.

   Python 188 139

2. modules Public

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow 161 402

3. rnaseq Public

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow 621 576

4. chipseq Public

   ChIP-seq peak-calling, QC and differential analysis pipeline.

   Nextflow 147 118

5. sarek Public

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   Nextflow 242 300

6. eager Public

   A fully reproducible and state-of-the-art ancient DNA analysis pipeline

   Nextflow 91 68