vcf

Cloud-native genomic dataframes and batch computing

C library for high-throughput sequencing data formats

This vCard PHP library can easily parse or generate/export vCards as .vcf

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Haplotype VCF comparison tools

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

cython + htslib == fast VCF and BCF processing

annotate a VCF with other VCFs/BEDs/tabixed files

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Toolset for SV simulation, comparison and filtering

A Java API for high-throughput sequencing data (HTS) formats.

Personal Cancer Genome Reporter (PCGR)

Structural variant toolkit for VCFs

Syntax highlighting for computational biology

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

A collection of scripts and notes related to genomics and bioinformatics

Graph realignment tools for structural variants

machine learning for genomic variants

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Learning the Variant Call Format