althonos

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Writing Cython bindings to every single bioinformatics tool out there

Martin Larralde althonos

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Writing Cython bindings to every single bioinformatics tool out there

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PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.

325 followers · 296 following

EMBL, @zellerlab
Heidelberg, Germany
@althonos

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Pinned

pronto Public

A Python frontend to (Open Biomedical) Ontologies.

Python 205 40
ffpb Public

A progress bar for ffmpeg. Yay !

Python 246 27
zellerlab/GECCO Public

GEne Cluster prediction with COnditional random fields.

Python 35 3
PyFilesystem/pyfilesystem2 Public

Python's Filesystem abstraction layer

Python 1.8k 172
fastobo/fastobo Public

Faultless AST for Open Biomedical Ontologies.

Rust 18 2
pyhmmer Public

Cython bindings and Python interface to HMMER3.

Cython 66 7

2,062 contributions in the last year

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Activity overview

Contributed to althonos/pytrimal, althonos/pyhmmer, althonos/pyrodigal and 71 other repositories

Contribution activity

March 2023

Created 7 commits in 3 repositories

Created 1 repository

althonos/kodama Rust Mar 15

Created a pull request in diffeo/kodama that received 3 comments

Re-enable `num-traits` under an optional feature

Hi Andrew! First of all thanks a lot for developing this crate, I've been able to move some more of our data analysis pipeline to Rust thanks to it. …

+86 −45 • 3 comments