linkml

GPT-based ontological extraction tools, including SPIRES

Linked Open Data Modeling Language

Schema and generated objects for biolink data model and upper ontology

Simple Standard for Sharing Ontology Mappings

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…

Data transformation framework for LinkML data models

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

Python toolkit for SSSOM mapping format

SQL and SQLite builds of OWL ontologies

Automated assistance for the schema development lifecycle

Link Modeling Language (LinkML) model

Tools for working with KGCL

CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)

This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.

Runtime support for linkml generated models

A knowledge extraction tool that uses a large language model to extract semantic information from text

Metadata schema for the German Human Genome-Phenome Archive (GHGA)

Schema for chemistry ontology classes

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)