Pinned

1. fastp fastp Public

   An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

   C++ 1.6k 314

2. MutScan MutScan Public

   Detect and visualize target mutations by scanning FastQ files directly

   C 141 39

3. GeneFuse GeneFuse Public

   Gene fusion detection and visualization

   C 111 61

4. gencore gencore Public

   Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

   C++ 103 32

5. repaq repaq Public

   A fast lossless FASTQ compressor with ultra-high compression ratio

   C 111 19

6. fastv fastv Public

   An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

   C++ 105 24