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  1. tidymodules tidymodules Public

    An Object-Oriented approach to Shiny modules

    R 140 11

  2. YADA YADA Public

    Open-source Data Ops

    Java 81 19

  3. peax peax Public

    Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

    Jupyter Notebook 65 13

  4. cellxgene-gateway cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 47 27

  5. scar scar Public

    scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

    Python 41 4

  6. shinyValidator shinyValidator Public

    Audit your Shiny apps at each commit. Multiple levels of testings are offered: startup and crash tests, performance tests (load test and global code profiling), reactivity audit as well as output t…

    HTML 38 2

Repositories

Showing 10 of 76 repositories
  • knockofftools Public

    An R-package containing a suite of knockoffs functions and methods from existing R-packages and the knockoffs literature. Some of the R functions are novel implementations of recent methods.

    R 0 MIT 0 0 0 Updated Nov 16, 2023
  • NDSRIs_in_silico_tool Public

    N-nitrosamine Autonomous Carcinogenic Potency Categorization Approach Calculation Tool

    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Nov 14, 2023
  • pisces Public

    PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

    Python 27 Apache-2.0 3 9 0 Updated Nov 2, 2023
  • xgx Public

    Exploratory Graphics for PKPD data

    HTML 22 7 17 3 Updated Oct 13, 2023
  • xgxr Public

    R package for supporting exploratory graphics at http://opensource.nibr.com/xgx

    R 13 7 2 1 Updated Oct 13, 2023
  • RescaleSTx Public

    This is a package for rescaling coordinates for Visium 10x transcriptomics datasets. This enables the highest resolution (or an arbitrary resolution) of microscopy image to be used for STx analysis, which enables advanced image processing and machine-learning using image features and coordinates of spatial transcriptomics datasets

    Python 0 MIT 0 0 0 Updated Oct 11, 2023
  • peakCombiner Public

    The fully R based tool peakCombiner is a user-friendly, transparent, modular and customizable package with the purpose to create a consensus peak file from genomic input regions. The aim is to allow even novice R users to create good quality combined peak sets to be used as the starting point for most downstream differential analyses.

    R 3 1 0 0 Updated Oct 9, 2023
  • TF_Prioritization_Benchmark_GB2023 Public

    Code to reproduce the paper figures from TF prioritization tool outputs.

    0 MIT 0 0 0 Updated Sep 25, 2023
  • RBesT Public

    Tool-set to support Bayesian evidence synthesis in R

    R 12 GPL-3.0 3 0 1 Updated Sep 10, 2023
  • Data-Sharing-Technology-Assessment-Framework Public

    DSTAF (Data Sharing Technology Assessment Framework) is an R Shiny app developed to support stakeholders in their evaluation of technologies and approaches that advance their data-sharing initiatives, whether they are interested in technologies for external data sharing or support an organization's internal data reuse.

    R 0 GPL-3.0 0 0 0 Updated Sep 7, 2023
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