phenotypes

A Tool to Annotate and Prioritize Exome Variants

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

Repository for the GA4GH phenopacket schema

API for linked biological knowledge

PATO - the Phenotype And Trait Ontology

Learn interpretable computational phenotyping models from k-merized genomic data

Phenotype comparison tools using semantic similarity.

A phenotype-based tool for variant prioritization in WES and WGS data

Internationalisation of the HPO content

R package for epigraphdb

source files for OBA (Ontology of Biological Attributes)

phenol: Phenotype ontology library

Python library for extracting HPO encoded phenotypes from text

Fission Yeast Phenotype Ontology

The phenogrid widget

Runs CQL phenotype definitions against an OMOP repository

ComptoxAI - An artificial Intelligence toolkit for computational toxicology

Open Traits Network Registry and Website

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase