Pinned

1. dorado dorado Public

   Oxford Nanopore's Basecaller

   C++ 346 40

2. remora remora Public

   Methylation/modified base calling separated from basecalling.

   Python 135 15

3. medaka medaka Public

   Sequence correction provided by ONT Research

   Python 370 68

4. pod5-file-format pod5-file-format Public

   Pod5: a high performance file format for nanopore reads.

   C++ 101 11

5. fast-ctc-decode fast-ctc-decode Public

   Blitzing Fast CTC Beam Search Decoder

   Rust 173 28

6. bonito bonito Public

   A PyTorch Basecaller for Oxford Nanopore Reads

   Python 367 112