rep-seq

MiXCR is a universal software for fast and accurate extraction and downstream analysis of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Post-analysis of immune repertoire sequencing data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

A RepSeq processing swiss-knife

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

⚙️ A lightweight immune repertoire browser

Comparison of Adaptive Immune Receptor Repertoires

Substitution Profiles Using Related Families

Browser of clonal trees showing evolutionary development of antibodies with ultra-long CDR3s in 50 cattle individuals

Immune repertoire sequencing data analysis packages for Linux/MacOS.

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".