#

epidemiology

Here are 318 public repositories matching this topic...

WorldHealthOrganization / app

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COVID-19 App

dart firebase epidemiology appengine-java flutter coronavirus covid-19

Updated Jul 30, 2020
Dart

awesome-coronavirus

soroushchehresa / awesome-coronavirus

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🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

awesome corona awesome-list epidemiology 2019-ncov 2019ncov coronavirus coronavirus-info covid-19 covid19 sars-cov-2 covid19-data awesome-corona awesome-coronavirus 2019-ncov-data

Updated Jul 31, 2020
JavaScript

seirsplus

ryansmcgee / seirsplus

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Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

epidemiology epidemics epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid sars-cov-2

Updated Jul 16, 2020
Python

COVID-19-electronic-health-system / Corona-tracker

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An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.

react blockchain health public-health disease epidemiology symptoms blockstack pandemic patient-monitoring decentralized-applications coronavirus coronavirus-tracking covid-19 pandemic-disease-tracker

Updated Jul 31, 2020
JavaScript

CodeForPhilly / chime

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COVID-19 Hospital Impact Model for Epidemics

epidemiology epidemics code-for-america penn covid-19 code-for-philly

Updated May 20, 2020
Python

DataForScience / Epidemiology101

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Epidemic Modeling for Everyone

python blog medium modeling epidemiology covid-19

Updated Jun 28, 2020
Jupyter Notebook

statnet / EpiModel

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Mathematical Modeling of Infectious Disease Dynamics

network-graph agent-based-modeling epidemiology epidemics infectious-diseases

Updated Jul 31, 2020
R

lindbrook / cholera

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R Package for Analyzing John Snow's 1854 Cholera Map

r data-visualization public-health epidemiology voronoi datasets cholera voronoi-polygons john-snow triangulation-delaunay

Updated Jul 30, 2020
R

IFRCGo / cbs

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Red Cross: Community-Based Surveillance

surveillance redcross epidemiology non-profit community-project health-informatics

Updated Nov 26, 2019
C#

jisungk / RIDDLE

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Race and ethnicity Imputation from Disease history with Deep LEarning

machine-learning bioinformatics deep-learning biology computational-biology neural-networks imputation epidemiology

Updated Jul 17, 2018
Python

wxwx1993 / PM_COVID

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Public Available Code and Data to Reproduce Analyses in "Exposure to air pollution and COVID-19 mortality in the United States".

epidemiology air-pollution covid-19

Updated Jul 25, 2020
R

InstituteforDiseaseModeling / EMOD

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Source files for building the IDM EMOD disease transmission model.

modeling idm stochastic epidemiology malaria hiv

Updated Apr 10, 2019
C++

Python-for-Epidemiologists

pzivich / Python-for-Epidemiologists

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Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3

python tutorial epidemiology causal-inference

Updated May 13, 2020
Jupyter Notebook

COVID-19-data

starschema / COVID-19-data

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Unpivoted and cleaned data sets on the COVID-19 pandemic

epidemiology publichealth virology coronavirus covid-19

Updated Jul 31, 2020
Jupyter Notebook

zEpid

pzivich / zEpid

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Epidemiology analysis package

data-science tmle epidemiology odds-ratio g-formula risk-ratio ipw inverse-probability-weights epidemiology-analysis risk-difference aipw g-computation targeted-maximum-likelihood incidence-rate-ratio g-estimation

Updated Jul 19, 2020
Python

thoughtworks / epirust

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An agent-based epidemiology simulation framework built in Rust

rust agent-based-modeling epidemiology agent-based-simulation

Updated Jul 31, 2020
Rust

seandavi / sars2pack

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An R package with nearly 40 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources

data-science geospatial data-visualization datascience public-health rstats epidemiology datasets epidemics rstats-package biomedical-data coronavirus coronavirus-tracking covid-19

Updated Jul 17, 2020
R

eebrown / data2019nCoV

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COVID-19 Pandemic Data R Package

data world r canada dataset epidemiology ontario who rpackage ncov coronavirus ncov-2019 covid-19 covid covid-data situation-reports transcribed-data

Updated Jul 29, 2020
R

simonrharris / SKA

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Split Kmer Analysis

genomics epidemiology bacterial-genomes

Updated Jan 23, 2019
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reichlab / flusight

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Influenza forecasts visualizer

statistics wiki prediction visualizer forecasting epidemiology influenza-forecasts-visualizer cdc-flusight-challenge predictions influenza

Updated Nov 5, 2019
JavaScript

Circuitscape / Circuitscape.jl

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Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

julia julia-language epidemiology sparse-linear-systems movement-ecology landscape-ecology circuit-analysis climate-change animal-movement forest-fire landscape-genetics

Updated Jul 26, 2020
Julia

ImpulsoGov / farolcovid

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🚦

🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19

data-science data statistics epidemiology social-good streamlit covid-19

Updated Jul 31, 2020
Jupyter Notebook

ecohealthalliance / EpiTator

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EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

nlp geonames spacy epidemiology disease-surveillance toponym-resolution

Updated May 4, 2020
Python

Covid-19-Tracker

ankithans / Covid-19-Tracker

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This is an Covid-19 tracker especially made for India

tracker dart api epidemiology flutter dartlang coronavirus-tracking covid-19 covid-api covid-data covid-19-india

Updated Jul 25, 2020
Dart

tirthajyoti / Covid-19-analysis

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Analysis with Covid-19 data

visualization python data-science machine-learning analytics numpy modeling epidemiology object-oriented-programming pandemic coronavirus covid-19 covid-data covid19-data

Updated May 7, 2020
Jupyter Notebook

kausaltech / reina-model

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Agent-based simulation model for COVID-19 spread in society and patient outcomes

simulation agent-based-modeling epidemiology agent-based-simulation covid-19

Updated Jul 19, 2020
Python

UMMISCO / kendrick

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Domain-Specific Modeling for Epidemiology

dsl smalltalk pharo epidemiology mathematical-modelling pharo-smalltalk model-driven-engineering infectious-diseases

Updated Jul 20, 2020
Smalltalk

CDCgov / MicrobeTrace

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The Visualization Multitool for Molecular Epidemiology and Bioinformatics

bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv cdc phylogenomics phylogeny sequence-alignment genomic-data-analysis genomics-visualization pathogens

Updated Jul 23, 2020
HTML

pennsignals / chime_sims

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Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

epidemiology epidemics penn covid-19 covid covid19

Updated Jul 16, 2020
Jupyter Notebook

spiros / chronological-map-phenotypes

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Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

epidemiology icd-10 phenotype electronic-health-record health-informatics read-code

Updated Jun 22, 2020

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