BioJulia

Repositories

• BioSequences.jl

  Biological sequences for the julia language

  bioinformatics biology biological-sequences biojulia
  Julia MIT 25 55 6 3 Updated Jul 25, 2020

• BioAlignments.jl

  Sequence alignment tools

  bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis
  Julia MIT 15 24 6 2 Updated Jul 25, 2020

• XAM.jl

  Parse and process SAM and BAM formatted files

  bam-files bioinformatics sam bam biojulia sam-files sam-format
  Julia MIT 6 9 7 1 Updated Jul 22, 2020

• KmerAnalysis.jl

  K-mer counting algorithms and count-data utilities for the BioJulia framework

  kmer kmer-frequency-count kmer-distribution kmer-counting biojulia kmer-composition kmers
  Julia MIT 2 4 0 0 Updated Jul 18, 2020

• TwoBit.jl

  Support for working with 2Bit formatted sequence data files
  Julia MIT 2 6 0 0 Updated Jul 17, 2020

• KmerAnalysisMakie.jl

  Makie recpies for visualising KmerAnalysis types and results.
  Julia MIT 0 1 0 0 Updated Jul 17, 2020

• FASTX.jl

  Parse and process FASTA and FASTQ formatted files of biological sequences.

  parsing julia bio file-format fasta fastq-format fastq
  Julia MIT 8 18 0 0 Updated Jul 16, 2020

• GenomeGraphs.jl

  A modern genomics framework for julia

  bioinformatics genomics biology julia bio genome-sequencing genomes
  Julia 6 30 1 0 Updated Jul 6, 2020

• Indexes.jl
  Julia MIT 2 2 1 0 Updated Jun 24, 2020

• GFF3.jl

  bioinformatics gff3 gff3-files gff3-format
  Julia MIT 2 3 2 1 Updated Jun 22, 2020

• BBI.jl
  Julia MIT 1 2 0 0 Updated Jun 20, 2020

• GenomicFeatures.jl

  Tools for genomic features in Julia.
  Julia 9 22 1 0 Updated Jun 20, 2020

• BigBed.jl

  bioinformatics bigbed bigbed-files
  Julia MIT 3 3 1 3 Updated Jun 20, 2020

• BigWig.jl

  bioinformatics bigwig bigwig-files bigwig-reader
  Julia MIT 2 2 0 0 Updated Jun 20, 2020

• BioSymbols.jl

  Nucleic and amino acid primitive types

  bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids
  Julia MIT 10 10 0 1 Updated Jun 19, 2020

• MMTF.jl

  A julia package to parse and write MMTF file

  bioinformatics pdb julia-package mmtf rcsb
  Julia MIT 2 6 0 0 Updated Jun 10, 2020

• BioStructures.jl

  A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

  bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics
  Julia 11 29 2 0 Updated Jun 10, 2020

• ReadDatastores.jl

  Datastores for reads, not your papa's FASTQ files.

  files bam-files bioinformatics genomics storage biology format
  Julia MIT 2 6 0 0 Updated Jun 7, 2020

• FormatSpecimens.jl

  Biological file format specimens for testing packages, and functions to assist in testing.
  Julia 2 4 0 0 Updated Jun 5, 2020

• PopGen.jl

  Population Genetics functions in Julia.
  MIT 15 4 1 0 Updated Jun 4, 2020

• NTupleKmers.jl

  EXPERIMNTAL: Replacement for BioSequences.jl kmers, supporting much longer K.
  Julia MIT 1 1 0 0 Updated Jun 3, 2020

• Automa.jl

  A julia code generator for regular expressions

  julia regular-expression
  Julia 11 88 4 3 Updated May 29, 2020

• MicrobiomePlots.jl
  Julia 2 3 0 0 Updated May 27, 2020

• BED.jl

  bioinformatics bed-format
  Julia MIT 3 3 0 2 Updated May 27, 2020

• Bio.jl Archived

  [DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

  bioinformatics genomics biology deprecated dna biojulia biojulia-packages
  Julia MIT 63 255 0 0 Updated May 27, 2020

• BioJuliaRegistry Archived

  The BioJulia package registry

  bioinformatics biology julia-packages biojulia biojulia-registry
  3 8 0 0 Updated May 26, 2020

• SubstitutionModels.jl

  Biological Sequence Substitution Models for Julia

  bioinformatics julia phylogenetics substitution-models
  Julia 7 12 0 0 Updated May 25, 2020

• Microbiome.jl

  For analysis of microbiome and microbial community data

  biology julia-language microbiome ecology
  Julia 5 18 1 0 Updated May 24, 2020

• biojulia.github.io

  BioJulia's Website
  HTML 3 1 1 0 Updated May 24, 2020

• academic-kickstart

  Forked from sourcethemes/academic-kickstart

  Easily create a beautiful website using Academic and Hugo
  Shell MIT 4,170 3 0 0 Updated May 24, 2020