alignments

Foldseek enables fast and sensitive comparisons of large structure sets.

Align Tools is just perfect Unity asset plugin to align gui object

Scalable RNA-seq analysis

⛏HLA predictions from NGS shotgun data

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Mini tool for arranging HTML elements along with ellipse subset shapes

🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

Pairwise alignment of membrane protein sequences

STRAC (Scalable Trace Comparison)

Software tools to collect and analyze Coronavirus sequences using HMMs

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

DIDA Project

Showcase of parallelization technologies using sequence alignment algorithms

The effects of word segmentation quality on word alignments.

Optimization of operations from pairwise2 module in Biopython library

sub-optimal local pairwise alignments and visualization

Finding outlier sequences in amino acid multiple sequence alignments.

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

Calculate taxon-specific alignment statistics from a collection of UCE alignments