A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Scalable long read self-correction and assembly polishing with multiple sequence alignment

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

React rerelease of MSAViewer

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Cluster up to millions of peptide sequences on shared sequence motifs.

Multiple sequence alignment visualizer

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

Cultivate your multiple sequence alignments to get better trees

plot Multiple Sequence Alignment(MSA) of Clustal by python package

Python bindings to spoa

a multiple sequence alignment tool

MSABrowser: dynamic and fast visualization of sequence alignments, variations and annotations

Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree

R implementation of the SigniSite method. Correlating residue-level associations to sequence phenotype

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

A collection of phylogenetics tutorials delivered to colleagues at the Centre for Biological Control (CBC). Topics include producing Bayesian and Maximum Likelihood trees, haplotype networks, reading phylogenies into R, analysing ISSR and SSR data, and using STRUCTURE and SplitsTree.

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

An alignment editor for phylogenetic purposes

Implementation of the NetMSA algorithm in Julia

Visualizing differences between alternative multiple sequence alignments of the same dataset

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4

GACMSA: Get Allele counts from Multiple Sequence Alignment files

A statistical measure for gauging the polymorphic extent of sequences in a multiple sequence alignment.

Comparative Analysis of DNA sequencing Algorithm