INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
CLI already lints, but programmatic interface doesn't lint by default. Model linting should definitely be performed when import fails to avoid having to reimplement validation checks in amici and provide helpful error messages.
Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time
CLI already lints, but programmatic interface doesn't lint by default. Model linting should definitely be performed when import fails to avoid having to reimplement validation checks in amici and provide helpful error messages.