genetics

It looks strange to have the VQL autocompleter adding a space ..
It makes query like this :

 SELECT chr ,pos , ....

Please remove the space insert after autocompletion .

For association testing and PCA (at least), it may be useful to have a function that imputes dosages/allele counts. With floating point values (i.e. from bgen), this can be very simple as a user, e.g. ds.call_genotype_probability.fillna(ds.call_genotype_probability.mean(dim="samples")). With alternate allele counts having a sentinel integer, it is a little more complicated. The best way t

Innit's unit tests currently only cover a small percentage of the codebase. Ideally at least all core functionalities e.g.: genetics, actions etc would be covered by automated tests.