amr

Bug Description

For classes such as GenericConstantMaterial that use templating to create non-AD and AD versions, the corresponding documentation pages do not contain a list of input files that use the class even though '!syntax inputs ...' appears in the .md file.

Steps to Reproduce

See https://mooseframework.inl.gov/source/materials/GenericConstantMaterial.html as an example.

Im

castro.change_max = 1.0 means that the timestep can only ever stay the same or decrease relative to its initial value. I think we should disallow this value, I have a hard time imagining a use case for this (if you want a fixed timestep, use fixed_dt, and if you want a timestep cap but still allow the timestep to decrease, use max_dt). It causes problems with the retry functionality.

The current implementation of StructuredMesh1D uses the volume integral and interface flux from TreeMesh, which assume Cartesian grids. Creating a StructuredMesh1D with a nonlinear mapping causes the simulation to fail (errors bigger than expected, no convergence, instabilities).

The data structures that are used by the higher dimensional StructuredMeshes (jacobian_matrix, `inverse_

This depends on #57, although #57 will be informed by this issue.

The AMR concept inventory is, as I understand, a fork of Propbank frames. It is packaged with the LDC release which I don't have access to and also raises questions of licensing if I were to include (a derived form of) those in this repository.

There's a plain-text version, that I